RnoEX0079201 @ rn6
Exon Skipping
Gene
ENSRNOG00000004932 | Sel1l3
Description
SEL1L family member 3 [Source:RGD Symbol;Acc:1562860]
Coordinates
chr14:60123169-60136313:+
Coord C1 exon
chr14:60123169-60123261
Coord A exon
chr14:60127872-60128053
Coord C2 exon
chr14:60135743-60136313
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTATTTACTCAGCAGAAA
3' ss Score
4.8
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CCCCGGGCCGCAGCCATGGTCCCCCCGAGCGGCGGTGTCCCCCTGAGCCTCGGCGGCCGCCCTGCCAGCGCGCTGCTCTTTCTCTGCTACCTG
Seq A exon
AAATGGAACAAAATGGGACCTTTAAGCCAATGCAATTGCTTTTTTGACCGTGGAAAGTTTGATCCAGCCAGTTTGGAGAGAGAGTGCTCTGGAGCCAAAGTCTTAGGTGATGGATGGAGTGGCCAGCAGGAGAAAAACAGCCGTGGTTATTGTTTGCGTATCTGACCTGCTCCCACACACTG
Seq C2 exon
AATTTTGTGCCATCTTTGGGCAGGCAGACTTCCCTGACGACATCGGTGCTGCCCAGAACAGAACAGAGCACAACGTACACAGACTTTATTTATTTTACTGCCTTTGAAGGGAGCGTGCGCAATGTCTCTGAAGTCTCTGTGGAGTATTTATGCTCCCAGCCTTGTGTTGTCAATTTGGAAGCGGTTGTGTCATCCGAGTTCAGAAGTAGCATTCCCGTGTACAAAAAGAGGTGGAGGAATGAGAAGCATCTTCACACCAGCAGGACACAGATAGTACACGTGAAGTTTCCGAGCATTATGGTGTACAGGGATGACTACCTGATCAGACACCCCATCTCGGTGTCCCCAGTGATTCTCCGAGCCTGGATCACTCACTGGCACAGTGGCGGGGGCTTGAACGTGCGAGGGGAGGAGAATTTGCTGCACGCAGTAGCCAAGAATTACACCCTGCTGCAGACGGTCCCGCCTTTCGAACGGCCTTTCAAAGATCATCAGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004932-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000006610fB13099
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCTCTTTCTCTGCTACC
R:
CCACCTCTTTTTGTACACGGGA
Band lengths:
257-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]