RnoEX0079574 @ rn6
Exon Skipping
Gene
ENSRNOG00000006545 | Sept7
Description
septin 7 [Source:RGD Symbol;Acc:620469]
Coordinates
chr8:26421352-26434157:+
Coord C1 exon
chr8:26421352-26421356
Coord A exon
chr8:26432865-26432873
Coord C2 exon
chr8:26434055-26434157
Length
9 bp
Sequences
Splice sites
3' ss Seq
GATGGAAATGTTTCCATTACAAA
3' ss Score
-6
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
TATCT
Seq A exon
AAAGTAGCT
Seq C2 exon
CAACCGAAGAACCTTGAGGGCTATGTGGGATTTGCCAACCTCCCAAATCAAGTGTACAGAAAATCGGTGAAAAGAGGATTTGAATTCACTCTTATGGTAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006545-MICROEX1-3/3
Average complexity
MIC-M
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0073513=Septin=PU(3.6=28.6)
Main Skipping Isoform:
ENSRNOT00000063967fB13151
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]