RnoEX0079819 @ rn6
Exon Skipping
Gene
ENSRNOG00000025892 | Set
Description
SET nuclear proto-oncogene [Source:RGD Symbol;Acc:1307467]
Coordinates
chr3:8635503-8636370:+
Coord C1 exon
chr3:8635503-8635616
Coord A exon
chr3:8635992-8636117
Coord C2 exon
chr3:8636224-8636370
Length
126 bp
Sequences
Splice sites
3' ss Seq
GATTTGACAAAACGCTCAAGTCA
3' ss Score
-5.95
5' ss Seq
TTGGCCAAA
5' ss Score
-14.16
Exon sequences
Seq C1 exon
TATTTTGATGAAAATCCTTACTTTGAAAATAAAGTTCTCTCCAAAGAATTTCATCTGAATGAGAGCGGTGACCCATCTTCAAAGTCCACCGAAATCAAATGGAAATCTGGAAAG
Seq A exon
TCAAACGCAGAATAAGGCCAGCAGGAAGAGGCAGCACGAAGAGCCAGAGAGCTTCTTTACCTGGTTTACTGACCATTCAGACGCAGGTGCTGACGAGTTAGGAGAGGTCATCAAAGATGATATTTG
Seq C2 exon
GTTCCCGATATGGATGATGAAGAAGGAGAGGCAGAGGATGACGATGATGACGATGAAGAGGAGGAAGGGTTGGAAGACATTGATGAAGAAGGAGACGAGGACGAAGGTGAAGAAGACGATGATGAGGATGAAGGGGAGGAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025892-'17-12,'17-11,18-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0095613=NAP=FE(23.4=100),PF0218511=HR1=PU(12.8=15.8)
A:
PF0095613=NAP=PD(2.1=60.0)
C2:
PF0095613=NAP=PD(1.0=4.1)
Main Inclusion Isoform:
ENSRNOT00000050528fB13204
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTCTCCAAAGAATTTCATCTGA
R:
CTCCTTCCTCCCCTTCATCCT
Band lengths:
227-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]