RnoEX0079907 @ rn6
Exon Skipping
Gene
ENSRNOG00000021143 | Setdb1
Description
SET domain, bifurcated 1 [Source:RGD Symbol;Acc:1308370]
Coordinates
chr2:196515540-196516438:-
Coord C1 exon
chr2:196516306-196516438
Coord A exon
chr2:196515775-196515916
Coord C2 exon
chr2:196515540-196515665
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGGTATCTTTTGTATCCCAGGCT
3' ss Score
6.67
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
Exon sequences
Seq C1 exon
CTTCGTGAAGCTATGGCTGCCTTAAGAAAATCAGCTCAAGATGTCCAGAAGTTCATGGATGCTGTGAATAAGAAAAGCAGTTCTCAAGATCTACATAAAGGTTAGTGTCGAGGAGTACCTGCATAGATGAGAC
Seq A exon
GCTGGCCTTGAGTTTCCTGTGTTGCTGAGGATGACCTTAAACTTCTGATCCTCCTGCCTTCCCTACCTGAGTACTTGAGATTACACCATGAACTATGCCAGGCGTATACAGGGCTGAGGTTCAAATTCAGGGCCCTGAGCAG
Seq C2 exon
GAACCTTGGGTCAGGTGTCTGGAGAACTGAGCAAAGATGGGGACCTGATAGTCAGCATGCGGATTCTGGGCAAGAAGAGGACTAAGACGTGGCACAAAGGCACCCTCATTGCCATCCAGACTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021143-'14-7,'14-6,15-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=1.000 C2=0.116
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF150571=DUF4537=PU(17.4=48.8)
Main Inclusion Isoform:
ENSRNOT00000028709fB13228
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGCCTTAAGAAAATCAGCT
R:
AGTCTGGATGGCAATGAGGGT
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]