RnoEX0082087 @ rn6
Exon Skipping
Gene
ENSRNOG00000014369 | Slc27a4
Description
solute carrier family 27 member 4 [Source:RGD Symbol;Acc:1307383]
Coordinates
chr3:8371514-8372301:+
Coord C1 exon
chr3:8371514-8371623
Coord A exon
chr3:8371869-8372033
Coord C2 exon
chr3:8372175-8372301
Length
165 bp
Sequences
Splice sites
3' ss Seq
GCCGCTACCTCCTGAACCAGCCA
3' ss Score
2.48
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAAACATTGTGGGGATTGGCCAGTGCGTACTCCACGGCATGACTGTGGTGATCCGGAAGAAGTTTTCAGCCTCCCGGTTCTGGGATGACTGTATCAAGTACAACTGCACA
Seq A exon
CCACCCCGTGAGGCTGAGTCTCGGCACAAGGTGCGCATGGCACTGGGCAACGGTCTCCGGCAGTCCATCTGGACCGACTTCTCCAGCCGTTTCCACATTCCCCAAGTGGCCGAGTTCTACGGGGCCACCGAGTGCAACTGTAGCTTGGGCAACTTTGACAGCCAG
Seq C2 exon
GTGGGGGCCTGTGGCTTCAATAGCCGCATCCTGTCCTTTGTGTACCCCATCCGCTTGGTACGAGTCAATGAGGATACCATGGAACTGATCCGGGGACCCGATGGCGTCTGCATTCCCTGTCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014369-'12-14,'12-13,13-14
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.3=100)
A:
PF0050123=AMP-binding=FE(15.9=100)
C2:
PF0050123=AMP-binding=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATTGTGGGGATTGGCCAG
R:
TGGTTGACAGGGAATGCAGAC
Band lengths:
234-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]