RnoEX0082338 @ rn6
Exon Skipping
Gene
ENSRNOG00000018649 | Slc35c2
Description
solute carrier family 35 member C2 [Source:RGD Symbol;Acc:1311250]
Coordinates
chr3:161810638-161812243:-
Coord C1 exon
chr3:161812220-161812243
Coord A exon
chr3:161811467-161811476
Coord C2 exon
chr3:161810638-161810728
Length
10 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTTTCTGGACGGCAGGCA
3' ss Score
4.18
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
CTCCCGGCGAGAACCTGGGTGGAG
Seq A exon
GCAAGTGCAG
Seq C2 exon
GTCTTTGAAGCACTAAGCTGTACAGCCACATTCCGCTGAGGAGCTAGAGGGCAGCCAGGTGTTACAGCATCGTTGCCCACCCTGCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018649-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAGAACCTGGGTGGAG
R:
AACGATGCTGTAACACCTGGC
Band lengths:
93-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]