RnoEX0082779 @ rn6
Exon Skipping
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48246533-48250796:+
Coord C1 exon
chr3:48246533-48246694
Coord A exon
chr3:48248462-48248473
Coord C2 exon
chr3:48250635-48250796
Length
12 bp
Sequences
Splice sites
3' ss Seq
ACATTTTTCATTTTTTTTAGGTT
3' ss Score
12.03
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GAGTGCAGATCACTCCACGGGGAATATGTCGGGCGAGCCTGTGGCCATGGCCACCCGTATGTGCCGGACGTTCTCTTCTGGTCAGTGATCCTGTTCTTCTCCACAGTTACTATGTCAGCCACCCTGAAGCAGTTCAAGACCAGCCGGTATTTCCCCACTAAG
Seq A exon
GTTCGATCCATA
Seq C2 exon
CCCACCAGAGACGACCGTGGCTGGTTTGTTACACCTTTAGGTCCAAACCCATGGTGGACAATCATTGCTGCCATCATTCCAGCATTACTCTGTACTATTCTGATTTTCATGGACCAGCAGATTACAGCTGTTATCATCAACAGGAAGGAGCACAAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307-'29-36,'29-35,30-36
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.3=100)
A:
PF0095516=HCO3_cotransp=FE(7.2=100)
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCAGTTCAAGACCAGCC
R:
TCCACCATGGGTTTGGACCTA
Band lengths:
96-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]