RnoEX0082831 @ rn6
Exon Skipping
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20559637-20574477:-
Coord C1 exon
chr14:20574303-20574477
Coord A exon
chr14:20561721-20562072
Coord C2 exon
chr14:20559637-20559770
Length
352 bp
Sequences
Splice sites
3' ss Seq
ATCACCTGTCTTTGCTTCAGAAT
3' ss Score
9.32
5' ss Seq
ACGGTTGGT
5' ss Score
6.35
Exon sequences
Seq C1 exon
GTTCTGTGGTGGATTAATTAAGGACATAAAGAGGAAAGCACCATTTTTTGCCAGTGACTTTTATGACGCTTTAAATATTCAGGCTCTCTCGGCAATTCTCTTCATCTATCTGGCGACGGTAACCAACGCCATCACTTTCGGAGGCCTGCTCGGGGATGCCACTGACAACATGCAG
Seq A exon
AATTGTCAGCCACAGAATGGAAAACTAGCACTTATGGAGGGATCAAGCACTGCAATAAAAATAATCTGCCTTCGAGTCATCACGTGGCTTCCATAAATCACGGCAGTTTTCTGGAAGAAACCGCTTGCTGTCTTTACTGACTGAGCAGCCAGGACTCTTGACCTTTGATAAAGAGACCTAGGGTGTCACTTGGGCGTGTCTTAGGTTCCTCCAGCACTAGCTGGGAACCTGCTAAGCTCGTGGACGGGTGGTGGGCAGGGGAGGAGAAACAGAAGCTGCAGGAAGACCTTGTTCCTGCCCTCCCAGAGATGGATGGCTGTGTCGAGCCAAGCAGAGGATCCGAAATCTCACG
Seq C2 exon
GGTGTGTTGGAGAGTTTCCTGGGCACTGCTGTCTCTGGCGCCATCTTTTGCCTTTTTGCGGGTCAACCGCTCACCATCTTGAGTAGCACGGGACCTGTTCTGGTGTTTGAGAGGCTTCTTTTCAACTTCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134-'32-28,'32-27,33-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.1=100)
A:
PF0095516=HCO3_cotransp=PD(13.2=31.2)
C2:
PF0095516=HCO3_cotransp=FE(21.9=100)
Main Inclusion Isoform:
ENSRNOT00000004391fB13730
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGGTGGATTAATTAAGGACA
R:
TGCTGAAGTTGAAAAGAAGCCTCT
Band lengths:
306-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]