RnoEX0082839 @ rn6
Exon Skipping
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20488288-20494113:-
Coord C1 exon
chr14:20494045-20494113
Coord A exon
chr14:20491358-20491531
Coord C2 exon
chr14:20488288-20488449
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCCCATTCCTCCCAGTTC
3' ss Score
7.88
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
TTTATCCCCATGCCTGTTCTGTATGGCGTGTTCTTGTATATGGGGGTGGCCTCACTGAACGGTGTGCAG
Seq A exon
TTCATGGACCGTCTTAAGCTGCTTCTCATGCCCCTGAAGCATCAACCTGACTTCATCTACCTGCGCCACGTCCCCCTGCGCCGAGTCCACCTGTTCACCTCCCTGCAGGTGTTGTGCCTGGCTCTGCTCTGGATCCTCAAGTCCACAGTGGCTGCGATTATTTTTCCAGTTATG
Seq C2 exon
ATCCTGGCCCTGGTAGCTGTCAGAAAAGGTATGGACTACCTCTTCTCCCAGCACGACCTCAGCTTCCTTGATGATGTCATTCCAGAGAAGGACAAGAAAAAGAAGGAGGATGAGAAGAAGAAGAAAAAGAAGAAAGGAAGTCTGGATAGCGACAACGACGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134-'47-44,'47-42,48-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.417
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.2=100)
A:
PF0095516=HCO3_cotransp=PD(6.5=58.6),PF103594=Fmp27_WPPW=PU(0.1=0.0)
C2:
PF103594=Fmp27_WPPW=FE(68.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATGCCTGTTCTGTATGG
R:
ATCGTCGTTGTCGCTATCCAG
Band lengths:
226-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]