RnoEX0083450 @ rn6
Exon Skipping
Gene
ENSRNOG00000026065 | Slit1
Description
slit guidance ligand 1 [Source:RGD Symbol;Acc:69307]
Coordinates
chr1:260847288-260850477:-
Coord C1 exon
chr1:260850249-260850477
Coord A exon
chr1:260850119-260850157
Coord C2 exon
chr1:260847288-260847418
Length
39 bp
Sequences
Splice sites
3' ss Seq
GAGTGCACCCCTGTCCACAGGAA
3' ss Score
6.93
5' ss Seq
GAGGTTAGG
5' ss Score
4.36
Exon sequences
Seq C1 exon
CGGACAGCTCTGTGAGATCCCACCTGCCCCCAGGAACTCCTGTGAAGGGACTGAGTGCCAGAATGGAGCCAACTGTGTAGACCAGGGCAGCCGGCCCGTATGCCAGTGCCTACCAGGCTTTGGAGGTCCCGAATGTGAGAAGTTGCTCAGTGTCAACTTTGTGGACCGGGACACTTACCTGCAGTTCACTGACCTGCAGAACTGGCCTCGGGCCAACATCACTCTTCAG
Seq A exon
GAACTGCAAGGAACCTGTGTGAGTCACTGCGATCCTGAG
Seq C2 exon
GTCTCCACAGCAGAGGACAATGGGATCCTCCTCTACAATGGGGATAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGCTACGACCCAGGCAGCTACCCCAGCTCTGCTATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026065_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(9.7=3.9)
A:
NO
C2:
PF0221019=Laminin_G_2=PU(33.3=97.7)
Main Inclusion Isoform:
ENSRNOT00000035415fB13834
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGGCCAACATCACTCTTC
R:
GTAGCTAACACGGACATGGCC
Band lengths:
119-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]