RnoEX0084997 @ rn6
Exon Skipping
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:75048366-75052041:+
Coord C1 exon
chr7:75048366-75048492
Coord A exon
chr7:75049209-75049382
Coord C2 exon
chr7:75051898-75052041
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTCACCATCTCCTAGGTG
3' ss Score
8.85
5' ss Seq
CAGGTCTAG
5' ss Score
1.01
Exon sequences
Seq C1 exon
GGCTCTCTGTTACTTGAAGCTGGGACAGTTTGAAGAGGCAAAGCTGGACTGTGACAAGGCACTTCAGATAGACAGCAAGAATGTGAAAGCCTCTTACAGACTCGAGCTCGCCCAGAAAGGACTCGAG
Seq A exon
GTGCTGTTCCACATAGAAATAAGGGTCACTGAATGTTCAAGTGTGGGGAAAAACGTTACTGGATGTGGCGGCTTGAAAGAAAACGGCCTCTACAGGTCCATGGGGAGGTGTGGCCTTTGTTGGAGGAAATGTGTCACTAGCAGGTGGACTTTGAGTTTCAAACACTCAAACCAG
Seq C2 exon
AATTGCCGGGAAAGAGTGGCGGATCCCAGTCAGGTTGTCCTCCTAAGCCCAGATTCCAGTGAAGCAGCCAGGCACCTGGACACTAAGAATGACACAGCACCTCCCAGCAGAGAGAGGGAGAGGAGGAGAATTGAAATCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.722
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(36.8=58.1)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000013801fB14114
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCTGTTACTTGAAGCTGGG
R:
CTCCTCTCCCTCTCTCTGCTG
Band lengths:
251-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]