RnoEX0085696 @ rn6
Exon Skipping
Gene
ENSRNOG00000003537 | Spta1
Description
spectrin, alpha, erythrocytic 1 [Source:RGD Symbol;Acc:1305194]
Coordinates
chr13:92267057-92270843:+
Coord C1 exon
chr13:92267057-92267182
Coord A exon
chr13:92267898-92267971
Coord C2 exon
chr13:92270703-92270843
Length
74 bp
Sequences
Splice sites
3' ss Seq
GATTGTCTTTCTATTTACAGCAT
3' ss Score
9.16
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GGGAAATATCAGAAGCACGAATCCTTTGTATCAGAGGTGCAAGCCAAATCAAGAGTGCTTCCTGAGCTGGAGGAAATCAGGGAGGCTCGATTTGCAGAAGATCATTTTGCCCATGAAGCCACCAAG
Seq A exon
CATAAACATTCTAGCCCATGTGAATGGTAACAAGATAGGATCAAGAAAGAATTTTTTCTTACTTTTTTCAACAA
Seq C2 exon
ACGCATCTGAAGGAACTTCGCCACTTGTGGGATCTGCTGTTGGAGTTGACCCAAGAGAAAAGTGACATCCTGCTGAGGGCACTGAAGTTCTATCAGTACTGTCAGGAGTGTGAAGACATCTTGGAGTGGGTCAAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003537-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.778 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(39.8=100)
A:
PF0043516=Spectrin=PD(4.9=40.0)
C2:
PF0043516=Spectrin=PD(24.3=53.2),PF0043516=Spectrin=PU(18.1=40.4)
Main Inclusion Isoform:
ENSRNOT00000066509fB14261
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGGTGCAAGCCAAATCA
R:
CCCTCAGCAGGATGTCACTTT
Band lengths:
175-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]