RnoEX0086030 @ rn6
Exon Skipping
Gene
ENSRNOG00000049780 | Sri
Description
sorcin [Source:RGD Symbol;Acc:1584485]
Coordinates
chr4:22996119-23010660:-
Coord C1 exon
chr4:23010602-23010660
Coord A exon
chr4:23005990-23006457
Coord C2 exon
chr4:22996119-23004991
Length
468 bp
Sequences
Splice sites
3' ss Seq
ACACTGGTTTCCTTTTTCAGTTC
3' ss Score
10.55
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
ATAGCTTCCGCAGACGGGATTCTGGTCAACAAGGAGTTGTGAATTTCTCGTACGATGAT
Seq A exon
TTCATCCAGTGTGTCATGACTGTCTAACTCAAGAGGCCGCTGTCTGAATATATTCAACATTCCAACTGGAGCCCACCTATTGCTTCCTCCTGCCCTTCAGTGCTGTGTGCAGACTCTGCCGACACACGCTCCTTGACAACTGTTGAATGGGATTATGCCTTTATCTAGAACCAAGGCTTCATTTTTAATTTTGATAATAAATTCCTTTGAAGTTTAATAGTAGAAAAACAAGTCTGTTATACCAGTCAGACCTCCTGAGCCATTATCAGTCATGCCTTATATTCCTGCTAACCCTCTTTTATATGAAGTATGCAAAATCTTTAACACATAATATATATTTTCTTGTGATATATGGAACCTTTTCATCAGACTTATCGGTTACCCTTTCTTTCCCAGGGGAATGTGGTTAAAAGTTTGTGTGGGATATGTGCAAAACCAGTGACCCTGGCCATCCGCACACTAGAAAGT
Seq C2 exon
ACATTTTCTGGAAGGAGAAGACACTCAGGGTCCCCATCTTTGAACAGAAGAGACTACTTACCTTTGAGGTAGTTCTGAGTGTGCAGAAGTATGCCGATGTAAAAAGTATCCCCAGTGTTTGGTTCCTACAGTTTGGCAACGAGCAATGGTTAGCAGTCTTCTCTCGCTAGCAATGTATCTGTCTTGTTTCTTGCACCATGTGAGCATGACCTTTCAAGTGAACGACTGACTAACTTATCAGCTGGTAAAATAAACATTTCATAAGCATCTTCAGCCTCATTTCACAAGTATATGTTCAGATAGCGTTTATATATAAAATATATGCATATACTATATACTCAGTCATTTCATGAGTGTTTATTCATCCCTAACTTACTATGTGCTTAGTTAGTACTTAATGCCCAGGTTACATGTCAAAGGGGAGGCTTCCTGTGTGTCTTACAGAGGTAAGTCTGGGTTTCATTTCAATTTTTTTAAAATTCTTTAATATTTTTTACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049780_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACGGGATTCTGGTCAAC
R:
ACATATACTTGTGAAATGAGGCTGA
Band lengths:
345-813
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]