RnoEX0086279 @ rn6
Exon Skipping
Gene
ENSRNOG00000016687 | Ssc5d
Description
scavenger receptor cysteine rich family member with 5 domains [Source:RGD Symbol;Acc:1565772]
Coordinates
chr1:72457908-72459023:-
Coord C1 exon
chr1:72458715-72459023
Coord A exon
chr1:72458327-72458432
Coord C2 exon
chr1:72457908-72458225
Length
106 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTTTCCTTCCCCCAGCGT
3' ss Score
10.82
5' ss Seq
AAGGTGACC
5' ss Score
6.78
Exon sequences
Seq C1 exon
AGCGGCTGCGTCTGGTCTCAGGTCCCCATGGATGTGCCGGCCGCCTGGAAGTCTGGCACGGTGGACGTTGGGGTACTGTCTGCGATGATGGATGGGACCTCCGAGACGCAGCAGTGGCCTGTAGGGAGCTAGGATGTGGGGGAGCGCTGGCCGCCCCTGGAGGTGCCAGATTCGGACCTGGTGAGGGACCCGTGTGGATGGACGATGTCGGGTGTGGAGGAGGAGAGGAGGCCCTCCGGGACTGTCCCCGAAGCCCCTGGGGCCGGAGCAACTGTGACCACACAGAGGATGCAGGGCTGGTCTGTACTG
Seq A exon
CGTTCTTGTTCCCTGTCGGCGTAAGTCAATACCTGTTCACCCATCCTGCTTCTTCACTGGTCTAACTCAGTATCTGCTCACAACCCTAGACTCCCACGGTGTTAAG
Seq C2 exon
GTCCTGCACCCAGGTTGCGCCTTGCTGATGGTCCCCACGGCTGTGCTGGGCGCCTGGAGGTTTGGCATGGTGGCCGCTGGGGGTCGGTATGTGACGATGCTTGGGATCTTCGTGATGCCGCTGTGGCCTGCAGGGAGCTGGGCTGTGGGGGTGCCCTGGCTGCCCCAGGGGGTGCCTTCTTTGGTGAGGGGGCTGGACCCATCATCCTGGATGACCTCAGATGTCGAGGAAACGAGACAGCCTTACGATTCTGCCCTGCGAGGCCCTGGGGTCAGCATGACTGTCACCATCGGGAGGATGCTGGGGCTGTGTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016687_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
NO
C2:
PF0053013=SRCR=WD(100=91.6)
Main Inclusion Isoform:
ENSRNOT00000022480fB14379
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCACACAGAGGATGCAG
R:
TCATCCAGGATGATGGGTCCA
Band lengths:
250-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]