RnoEX0086432 @ rn6
Exon Skipping
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174173000-174187728:-
Coord C1 exon
chr1:174187624-174187728
Coord A exon
chr1:174177544-174177720
Coord C2 exon
chr1:174173000-174174250
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGTATTCATTGTCATACCAGGAA
3' ss Score
5.56
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GGCTCTGGGCTTGCAGAGAGCCGAAATGACCATGACTGCCAACAAGAACTCCAGTATCACTCATGGAGCCGGAGGCACTAAGGCCCCTCGGGAGACGCTGAGCAG
Seq A exon
GAAATGAGCTTTACAAAGTTGTCATCGAGAGCTATGCCAGCCCCAGCATCAAAGGTGGAAGAGTGGGAGTTGCTGTTGAAGTTACAGGAGACAACCTGGTTCTCAGTGTAGCCCAGGATGCCCTTTAGAGGGCCCTCGGATGCCTGCTTCACCACCGTCTTGCTGTCATCATACTTG
Seq C2 exon
GTCTCAGTCAGTTTCTCCGCCTCCAGTTTTATACCCACCAAGAAGTCCCATCTACCCACTCAGTGATAGTGAAACCTCAGCCTGCAGGTATCCCAGCCACTCTAAATCCCAGGTGCTTCTCAAGGACCGGCACTCCCGAAATCCTTCACCTCTAGGTCAAGACCCCTCCCCAGACACTTCACCACCCATCTGTACCCTCAAGGCTACCAGCTTCAGCTACTTGGACAGAACCCCTTCATTACGCAGAAGAGAGGACCAGAGGGAGAGCGTTCAAGGTGCAGTCCAGGATGTAGAGGGTGTGGCTGCTTGCCTTCCCCTTGCCCAGAGCACCCCATTCCTAGGGTCTGGCCCACGGAGTGTCTTGCTGAGTTGCACTGGTACCCGAGCCCACAACCTGGGTATCCGAGAGAAGATTTCAGCATGGGAAGGTCGCCGAGAGGCTTCACCCAGGATGAATCTGTGTGGAGAGAAGCGGGAGGGCCCTGGGAGCGAGAGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934-'19-9,'19-8,20-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000064902fB14404
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGAGAGCCGAAATGACC
R:
GTGAAGGATTTCGGGAGTGCC
Band lengths:
244-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]