RnoEX0086454 @ rn6
Exon Skipping
Gene
ENSRNOG00000001823 | St6gal1
Description
ST6 beta-galactoside alpha-2,6-sialyltransferase 1 [Source:RGD Symbol;Acc:3676]
Coordinates
chr11:80977209-80981422:-
Coord C1 exon
chr11:80981290-80981422
Coord A exon
chr11:80978668-80978746
Coord C2 exon
chr11:80977209-80977854
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGTATCTCAAACATCCTCAGGAA
3' ss Score
6.6
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGTTTTTGATCATCCTGAGAAAAATGAGCCTTGGCCTCCAGACCTAGTGAAGTAACCTCTTTCTCATGGAGAACAGTGCTGGCTCCTGAGGATCTGGAGGGCCTGCAGCCCCAGAGGGATTAGCCAGAAGCAG
Seq A exon
GAACGAGCTGGGTAGGAAAGGACTTCAGAGTCACAGGACAAGCAAAGTCCCAGGGGCGCAATTGCTTTGACTCATCCCG
Seq C2 exon
GCGTGGTTCCTGCTCTGCACAGTGGCTCTCCTGTCTGGACCATTCATTATGATTCATACCAACTTGAAGAAAAAGTTCAGCCTCTTCATCCTGGTCTTTCTCCTGTTCGCAGTCATCTGTGTTTGGAAGAAAGGGAGCGACTATGAGGCCCTTACACTGCAAGCCAAGGAATTCCAGATGCCCAAGAGCCAGGAGAAAGTGGCCATGGGGTCTGCTTCCCAGGTTGTGTTCTCAAACAGCAAGCAAGACCCTAAGGAAGACATTCCAATCCTCAGTTACCACAGGGTCACAGCCAAGGTCAAACCACAGCCTTCCTTCCAGGTGTGGGACAAGGACTCCACATACTCAAAACTTAACCCCAGGCTGCTGAAGATCTGGAGAAACTATCTGAACATGAACAAATATAAAGTATCCTACAAGGGACCGGGGCCAGGAGTCAAGTTCAGCGTAGAAGCACTGCGTTGCCACCTTCGAGACCATGTGAACGTGTCTATGATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001823_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0077713=Glyco_transf_29=PU(27.8=36.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAGAACAGTGCTGGCTC
R:
GCGAACAGGAGAAAGACCAGG
Band lengths:
179-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]