RnoEX0086460 @ rn6
Exon Skipping
Gene
ENSRNOG00000046515 | St6gal2
Description
ST6 beta-galactoside alpha-2,6-sialyltransferase 2 [Source:RGD Symbol;Acc:1559663]
Coordinates
chr9:6966908-7002330:+
Coord C1 exon
chr9:6966908-6966939
Coord A exon
chr9:6970716-6970862
Coord C2 exon
chr9:7001357-7002330
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCATTACCCTGTTTTAACAGTGA
3' ss Score
6.99
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GGCCGATCAACTCTCCAGTGCCTAGCGGCTAG
Seq A exon
TGAGAAGACTGGGCCTCAGAAAAGTGAAATGTCTTGACAGAGCTGGCAGATTTGCCCAAACCTTATGCTTCTAGGCTGTGCTCTGTGCTACGGACGAACACGAATGACCATTGTCAAAATTGTGTCCAGCCAGAGATTGCTGCAACT
Seq C2 exon
GTTTTGAGACCCCAAGGTGAAGTGCTGGCCCCAAAGATCTGCAATGAAACCACACTTGAAGCAATGGCGACAACGAATGCTCTTTGCAATATTTGTTTGGGGGCTCCTCTTTTTGGCAATTTTCATCTATTTCACCAACAGCAATCCTGCTGCACCTATGCCCAGCTCCTTTTCCTTCCTGGAGAGCCGCGGGCTCCTGCCTGTGCAGGGCAAGCAGAGGGTCATCATGGGTGCATTGCAGGAGCCCTCTTTGCCCAGAAGTTTGGAGCCAAGCAAAGTACTGATGGACGGCCACTCTGCGAGCCCTTTCAACAGCTGGCCTGGGGACCCACAGAAAGGGGACCAGGCCCAAGATGGCTTTGACAATGGGGATGAGTTTTTTACATCCCAGGTCGGGAGGAAATCACAAAGTGCTTTCTATCCTGAGGAAGACAACTACTTTTTTGTTGCGGGTCAGCCTGGGTTGTACCACCACCGGCAGGGTGCCCTGGGGCTGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046515_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.299
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0077713=Glyco_transf_29=PU(34.9=33.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTCTCCAGTGCCTAGCG
R:
ACCCATGATGACCCTCTGCTT
Band lengths:
258-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]