RnoEX0086483 @ rn6
Exon Skipping
Gene
ENSRNOG00000046984 | St6galnac6
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:RGD Symbol;Acc:1303196]
Coordinates
chr3:11633722-11639443:+
Coord C1 exon
chr3:11633722-11633901
Coord A exon
chr3:11635861-11636267
Coord C2 exon
chr3:11639336-11639443
Length
407 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTCCTTGTCCCACAGACG
3' ss Score
11.79
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GAGCAGCGGTCAGCAGTGTTTGTGGTCCTCTTTGCTCTCATCACCATCCTCATCCTCTACAGCTCCAACAGTGCCAACGAGGTCTTCCACTACGGCTCCCTGCGGGGCCGCTCGCGGCGGCCAGTCAACCTCAAGAAGTGGAGTTTCTCCAACGCCTACTTCCCTATCCTCGGCAACAAG
Seq A exon
ACGCTGCCGTCCCGGTGCAACCAGTGTGTGATCGTCACCAGCTCCAGCCACCTGCTGGGCACCAAACTGGGCCCTGAGATTGAGCGGGCCGAGTGCACCATCCGCATGAACGATGCTCCCACCACTGGCTACTCGGCCGACGTCGGCAACAAAACCACCTTCCGCGTAGTGGCTCATTCCAGTGTGTTCCGGGTGCTGCGGAAGCCCCAGGAATTTGTCAACAGGACCCCTGAAACTGTGTTCATCTTCTGGGGCCCCCCAAACAAGATGCAGAAGCCCCAGGGCAGCCTCCTGCGCGTCATCCAGCGGGCGGGCCTTGCGTTCCCTAACATGGAGGCCTATGCCGTCTCTCAAGCCCGCATGCAGCAGTTTGACGACCTCTTCCGGGGTGAGACAGGCAAGGACAG
Seq C2 exon
GGAAAAGTCCCACTCGTGGTTGAGCACAGGCTGGTTTACCATGGTGATTGCGGTGGAGTTGTGTGACCATGTGCACGTGTATGGCATGGTCCCTCCCGACTACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046984-'9-14,'9-7,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(16.1=73.3)
A:
PF0077713=Glyco_transf_29=FE(49.3=100)
C2:
PF0077713=Glyco_transf_29=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGCAGTGTTTGTGGTCC
R:
CAGTAGTCGGGAGGGACCATG
Band lengths:
278-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]