RnoEX0087161 @ rn6
Exon Skipping
Gene
ENSRNOG00000010150 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:RGD Symbol;Acc:620673]
Coordinates
chr3:21904100-21958194:-
Coord C1 exon
chr3:21956952-21958194
Coord A exon
chr3:21911253-21911297
Coord C2 exon
chr3:21904100-21904269
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATATGTGTGTATCCATGAAGGCC
3' ss Score
4.39
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
GCAGGCACAGTAGGGCTCAGGTGCGGTTGCGGCCGGAGCCAGACGCCGCGAGGTGGGTGGGACGCAGTTTACGTAAGCGGCCTCGCAGGTGCAGGCAGCGGCCGTAGGCCTGAGCGCCCTGCGCGCTCCCAGGTGCGCAGTTGACGCAGGCAGCAGCGCGGCGCAGCGGTGGCGGGCGCTGGCCGGAGCTCTCAGGTGCGGCAGAGCGCGCGTGCAGGGGGCGCGCGGAGGGCGATGGGGCGGGCTTTCCGTTCCTCAGCAGCCGCGGGGCCCGCCCCCTGGATCGGCCAATGGGAGTACTCGGCGGCGTCACGTGTTCGCCGCCGCCGCCGCCGCCACCGCGGTCGCTGCCGAACCTGAGCTCGGATCCGCGAGCGCCACCAAGGCAGCAGCCGCCGCAGCCGCCGCCGCTGTGCTGAGGAGCCGGAGACGCGGGCGACGACGGTGGCGGCGGCGGAGGCGGAGCGGGGAGCGGACGCGGGCGGAGCGCGGCGGCGCGG
Seq A exon
GCCAGAAGAGGGCATGGAATTCTCTGGAGCTGGAGTTACTTGTGG
Seq C2 exon
GTGCTTTCCAGAGAGCAATTTTCAAACATCTTTGCTTATATTTGACATTGAGCAGTCAGGGGATTCAGGCATATGAGGAGGTACTGTTACCCAAAACAGTGTCTAGTGAAGACGACAAGAAAGAGAGAAAAGGATCGTAAAAAGAAGCTAAAATACCATAGGAAACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010150_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAGGAGCCGGAGAC
R:
CCCTGACTGCTCAATGTCAAA
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]