RnoEX0088368 @ rn6
Exon Skipping
Gene
ENSRNOG00000027326 | Tada2b
Description
transcriptional adaptor 2B [Source:RGD Symbol;Acc:1561605]
Coordinates
chr14:79446057-79457333:+
Coord C1 exon
chr14:79446057-79446335
Coord A exon
chr14:79447274-79447335
Coord C2 exon
chr14:79454043-79457333
Length
62 bp
Sequences
Splice sites
3' ss Seq
GGAAGGATTCTACTCCACAGATG
3' ss Score
3.29
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CGGGGGAAGATGGCGGAGCTGGGTAAGAAGTACTGCGTGTACTGCTTGGCCGAGGTGAGCCCGCTGCGCTTCCGCTGCACAGAGTGCCAGGACATCGAGCTGTGCCCGGAGTGCTTCTCGGCCGGCGCGGAGATCGGCCACCACCGCCGCTACCACGGCTACCAGCTGGTAGACGGCGGGCGATTCACACTCTGGGGTCCTGAGGCAGAGGGCGGCTGGACCAGCCGCGAGGAGCAGCTGCTACTGGACGCCATCGAGCAGTTCGGCTTCGGCAACTGG
Seq A exon
ATGTCGTCCCAGTGGCAAACACCATGGCTCCTGCTCTCCAAAAACAATGGGTTACTTTGTCT
Seq C2 exon
GAAGACATGGCTGCTCATGTTGGTGCTTCTCGGACTCCCCAGGAAGTGATGGAGCACTACGTTAGTATGTATATCCATGGGAACTTGGGCAAAGCCTGTATCCCTGACACCATCCCCAACCGGGTGACAGATCATACCTGCCCCAGTGGAGGTCCTCTCTCACCCAGCCTTACCACACCATTGCCCCCATTGGACATCTCAGTGGCTGAGCAGCAGCAGCTGGGCTACATGCCGCTGCGAGATGACTATGAGATCGAGTACGACCAGGATGCTGAGACGCTCATCAGTGGGCTGTCTGTGAACTATGATGATGATGATGTGGAGATTGAGCTCAAACGTGCTCATGTAGACATGTATGTGCGGAAGCTGAAGGAGAGGCAGCGCCGGAAGAATATTGCCCGAGACTATAACTTGGTACCAGCCTTCCTGGGCAAGGACAAGAAGGAGAAAGAGAAGACATTGAAGAGAAAGATCACCAAGGAGGAGAAAGAGCTGCGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027326_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.188
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=55.6),PF0056912=ZZ=WD(100=46.7),PF0024926=Myb_DNA-binding=PU(48.9=25.6)
A:
PF0024926=Myb_DNA-binding=FE(43.5=100)
C2:
PF0024926=Myb_DNA-binding=PD(46.8=6.6),PF0443312=SWIRM=WD(100=24.2)
Main Inclusion Isoform:
ENSRNOT00000037061fB14725
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTCACACTCTGGGGTCCT
R:
AGTCCGAGAAGCACCAACATG
Band lengths:
135-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]