RnoEX0088791 @ rn6
Exon Skipping
Gene
ENSRNOG00000036598 | Tbc1d12
Description
TBC1 domain family, member 12 [Source:RGD Symbol;Acc:9377071]
Coordinates
chr1:257527121-257544218:+
Coord C1 exon
chr1:257527121-257527221
Coord A exon
chr1:257531678-257531762
Coord C2 exon
chr1:257544095-257544218
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTCTGTACTGTCTAGGTT
3' ss Score
9.35
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
CTGGGAGGCATGGACGCATGATTGCTAATGGGAGCTGCTGCTAGAGAATAAATGTGAAGAGGTTATAGAGAGAAAAGCTTGCTGGGAAGAATAAATGATAG
Seq A exon
GTTTATGCCATCCTGACACAAGCAAGAGTCATTTGAGAGATGGGAACCTCAATTGAGAAAATGGCTCCATAAGATTGGGCTGCAG
Seq C2 exon
AAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGATGGAAATTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036598-'2-2,'2-1,3-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000073502fB14793
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTAATGGGAGCTGCTGC
R:
TCTCTGGGAGGGACTTTACCA
Band lengths:
171-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]