RnoEX0088804 @ rn6
Exon Skipping
Gene
ENSRNOG00000006400 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:RGD Symbol;Acc:1309993]
Coordinates
chr14:79339258-79355845:+
Coord C1 exon
chr14:79339258-79339562
Coord A exon
chr14:79340592-79340646
Coord C2 exon
chr14:79355104-79355845
Length
55 bp
Sequences
Splice sites
3' ss Seq
TCATTCTGTTTTTGTTTCAGACT
3' ss Score
10.82
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGAATGGAGAGGGAAAGGACTGGGCTGTGGAGGGGCTCTGAGGGCCCCCTGGCCTAAGACGCTGGACAGAGACAGCAAAGTCCCAGGGATTGGCATGTGAACCTACTGTGACTGTAACCATGCCATGCCAGGAGCCAGTAGCATGGGAGGCAGGTTTGGGTTGGGCAGGACCTGACCTGGGGACAGTGGGATAGATTGGTGACACCAAGGCTGTGTTGCTTCACCTCCCAGCCCTATCCTCCTCTGTACGGTTCGAGGCACTGAGTGAGCTTGGCAGGTCGTGGAGATCAACTTCTGTCACAGAG
Seq A exon
ACTCAAGTTACAATGAGGCTTTATCTAGACCGCTTCTGGGGACTGATGGTAAAAG
Seq C2 exon
TTTCTTCTTGGACCAAGATGACTGATGGAAACCTTTCCACCTCTATGAATGGTGTAGCATTGATGGGCATTCTAGATGGTCGGCCAGGAGACTCCCTTCAGGAATTGCAACACCTTAGTATCAAGGCAGTGCCCAGATCCCTTTCAGTGCCTGACTATGGACCTACACTAAAACTTGGTGCTTTGGAAGATCGACACAGCCTTCAGTCAGTGGACTCGGGCATTCCTACCCTGGAGATTGGCAACCCAGAGCCTGTTCCCTGCAGTGTGGTCCATGTGAAGAGAAAGCAGTCTGAGTCAGAGATCATCCCGGAGCGGGCCTTCCAGAGTGCGTGCCCCTTGCCATCCTGTACACCCTCAGCTCCCACTGGCAGCGAACGGGAGCAAGCTGTGCGGAAGTCTTCCACCTTTCCCAGGACAGGCTATGACTCAGTGAAACTCTACAGCCCCACCTCCAAAGCCTTGAGCCGAAGTGACGATGTCTCTGTCTGCAGTGTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006400-'5-8,'5-4,10-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.335
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTATCCTCCTCTGTACGG
R:
TGCCCATCAATGCTACACCAT
Band lengths:
144-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]