RnoEX0090068 @ rn6
Exon Skipping
Gene
ENSRNOG00000019222 | Tfdp1
Description
transcription factor Dp-1 [Source:RGD Symbol;Acc:1560344]
Coordinates
chr16:81089308-81114000:+
Coord C1 exon
chr16:81089308-81089364
Coord A exon
chr16:81105465-81105531
Coord C2 exon
chr16:81113894-81114000
Length
67 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGTTGCTCTCTGCAGGCC
3' ss Score
9.39
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGGAGGGTACGCAGTTAAAGCCTTGATTTCCTGGATCTGGTAACATGGCAAAAGAT
Seq A exon
GCCAGTCTAATTGAAGCCAACGGAGAACTAAAGGTCTTTATAGACCAGAATCTTAGTCCTGGGAAAG
Seq C2 exon
GTGTGGTGTCTCTTGTGGCTGTGCACCCATCCACAGTGAACACACTGGGGAAGCAGCTTTTGCCAAAAACCTTCGGACAGTCCAATGTCAATATCACACAGCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019222_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGGTACGCAGTTAAAGC
R:
TGCTGTGTGATATTGACATTGGACT
Band lengths:
159-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]