RnoEX0090070 @ rn6
Exon Skipping
Gene
ENSRNOG00000019222 | Tfdp1
Description
transcription factor Dp-1 [Source:RGD Symbol;Acc:1560344]
Coordinates
chr16:81118882-81120219:+
Coord C1 exon
chr16:81118882-81118926
Coord A exon
chr16:81119594-81119696
Coord C2 exon
chr16:81119914-81120219
Length
103 bp
Sequences
Splice sites
3' ss Seq
CCCTGCTCTGATGCCAGCAGACG
3' ss Score
4.41
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGATTGGCACGCCTCAGAGACCTGCAGCAGCCAACACTATTGTG
Seq A exon
ACGCCTTTAGAACAGTGGTGCCTAGTGTGTGGTCCGGATCAGACCCATGCTGATTTCTGCCCTTCGGATGTCTGTCCGTCTTCCCAGACATTTAAAGGCACAG
Seq C2 exon
CGGAACAGGAAAGGTGAGAAGAATGGCAAAGGCCTGCGGCATTTCTCCATGAAGGTGTGTGAGAAGGTGCAGAGGAAAGGGACGACCTCCTACAATGAGGTGGCCGACGAGCTGGTTGCCGAGTTCAGCGCCGCTGACAACCACATCTTACCCAACGAGTCCGCCTACGACCAGAAGAACATCCGGCGGCGTGTGTACGATGCCTTAAATGTGCTGATGGCCATGAACATCATCTCCAAGGAGAAGAAGGAGATCAAGTGGATCGGCCTGCCCACCAACTCTGCTCAGGAGTGCCAGAACTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019222_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=NA C2=0.147
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0231915=E2F_TDP=WD(100=84.9),PF087815=DP=PU(4.1=7.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCAGCCAACACTATTGT
R:
TGTTCATGGCCATCAGCACAT
Band lengths:
251-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]