RnoEX0090086 @ rn6
Exon Skipping
Gene
ENSRNOG00000011241 | Tfdp2
Description
transcription factor Dp-2 [Source:RGD Symbol;Acc:1305814]
Coordinates
chr8:104157475-104164050:+
Coord C1 exon
chr8:104157475-104157543
Coord A exon
chr8:104161773-104161891
Coord C2 exon
chr8:104163899-104164050
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCTTAAACCTTTCCCATAAGGAA
3' ss Score
4.07
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATAGAGAAGCAAAGGCGGATAGAACGGATAAAGCAGAAGCGGGCCCAGCTACAAGAACTTCTCCTTCAG
Seq A exon
GAACACTCTTAATGCTGTTCAGCCTCTGGAACATGATATTGAGTCTGAAAAGAACAAAAAGCCAAAGGGAGTCAATAAAAGGGCAACAAATAAGGAAGTCAGCCCACAGTAAATGGGAG
Seq C2 exon
CAAATTGCTTTTAAAAACCTGGTACAGAGAAATCGACAAAATGAACAACAAAACCAGGGCCCTCCAGCTGTGAATTCCACCATTCAGCTGCCATTTATAGTCATTAATACAAGCAGGAAAACAGTCATAGACTGCAGCATCTCCAGTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011241_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.255
Domain overlap (PFAM):
C1:
PF087815=DP=FE(15.3=100)
A:
PF087815=DP=PD(6.1=50.0)
C2:
PF087815=DP=FE(34.7=100)
Main Inclusion Isoform:
ENSRNOT00000081204fB15027
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGGCGGATAGAACGGAT
R:
TTGTCACTGGAGATGCTGCA
Band lengths:
213-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]