RnoEX0090088 @ rn6
Exon Skipping
Gene
ENSRNOG00000011241 | Tfdp2
Description
transcription factor Dp-2 [Source:RGD Symbol;Acc:1305814]
Coordinates
chr8:104128475-104145560:+
Coord C1 exon
chr8:104128475-104128578
Coord A exon
chr8:104130623-104130718
Coord C2 exon
chr8:104145439-104145560
Length
96 bp
Sequences
Splice sites
3' ss Seq
AACATTCTTACTGGTTTCAGGAA
3' ss Score
6.59
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTAACATTTCACTTGTGGCCTTTCCAGTTTCAAGCACCAACTCACCAACAAAGATTTTACCGAAAACCTTAGGGCCAGTAAATGTGAATGTTGGACCCCAAATG
Seq A exon
GAAGTCTTTAAGGTATTATAAGCATGGCGTTTCCTCTGGTCAGTTGAAGACTGTCAATCATCTGCAGATACCAAGTAAAAGATAAAACAATTTACT
Seq C2 exon
ATTATAAGCACACCACAGAGAATTACCAATTCAGGAAGTGTTCTGATTGGGAGTCCATATACCCCTGCACCAGCAATGGTCACTCAGACTCACATAGCTGAGGCTGCTGGCTGGGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011241_MULTIEX4-1/6=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=0.000 C2=0.378
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000081204fB15028
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTTTCCAGTTTCAAGCA
R:
AGTCTGAGTGACCATTGCTGG
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]