RnoEX0090568 @ rn6
Exon Skipping
Gene
ENSRNOG00000021569 | Tiam1
Description
T-cell lymphoma invasion and metastasis 1 [Source:RGD Symbol;Acc:1307455]
Coordinates
chr11:29967593-29980669:-
Coord C1 exon
chr11:29980445-29980669
Coord A exon
chr11:29976028-29976082
Coord C2 exon
chr11:29967593-29967696
Length
55 bp
Sequences
Splice sites
3' ss Seq
CCACTCCCCTTTTCTGCCAGGCA
3' ss Score
8.12
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GCCTGAAGGCGGGGGACGAGATTCTTCAGATCAATAACCGTGCCGCTGGTACCCTGAACTCATCTATGCTCAAAGATTTCCTCTCACAGCCCTCTCTGGGCCTCCTGGTGAGGACCTACCCTGAGCCAGAGGGAGGAGTGGAGCTGCTAGAGAACCCACCCCACCGAGTGGACGGCCCTGTGGACCTTGGCGAGAGCCCCCTCACCTTCCTCACCAGCAACCCAG
Seq A exon
GCATGCTAAGGAAAGAGAGAAGGACACGTTTTTAATGGTGGCTTCTTCAAAATGA
Seq C2 exon
GGCACAGCCTCTCCAGCGAGCAGGGCAGCAGTGCTGAGACAGCTCCGGAAGAGGGCGAAGGACCGGACTTGGAGTCTTCCGATGAGACAGATCACAGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021569-'30-28,'30-27,31-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.496 A=0.455 C2=1.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(45.7=48.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000046486fB15102
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAGCTGCTAGAGAACCC
R:
CCTCTTCCGGAGCTGTCTCAG
Band lengths:
143-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]