RnoEX0090582 @ rn6
Exon Skipping
Gene
ENSRNOG00000016728 | Tiam2
Description
T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol;Acc:2324148]
Coordinates
chr1:44371871-44393411:+
Coord C1 exon
chr1:44371871-44372134
Coord A exon
chr1:44388571-44389301
Coord C2 exon
chr1:44393308-44393411
Length
731 bp
Sequences
Splice sites
3' ss Seq
GGCATGTCGTCCACCTCTAGAAA
3' ss Score
5.89
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GACTGAGAAAGGGCAATGAAATCAGGAGCTTAAATGGGGAAGCAGTGTCTGACCTTGACCTCAAGCAGATGGAGGCTTTGTTTTCTGAGAAGAGCGTTGGACTCACTCTAGTCGCCCGGCCTGCAGACACAAGAGCAAGCCTGTGTACTTCCTGCTCAGACAGTGACCTGTTCTCCAGGGACCAGAAAAGTCTGCTGCCCTCTCCCAACCAGTGCCAACTGCTGGAGGAATTCCTGGATAACTTTAAAAAAACCTCCACAAACG
Seq A exon
AAAATACTACTGATGAAGGAGACCGGTCGCCAAGTCTGGTGTCAGCGCAGCTGTCCCTGATAATGAACCTGGCTCCTGGCACCCATCTGAATGATGGACTCTCTCAATCGAATGTGAAGGAACTGACTACCGCTTAGATCTTTGGATCTGTGATCGCCCTGCTGCCAGGTAGACACTTTTGGTGGCCCAAATTAAATAAATGGTGGGTTTTCAGTTTGAGAGATCTCATCCCAAACTTGATTTCCCCGAGGCACACCAAGGCAAGGGCAAATATTTAACACAAGCAAAAGTAGCTATGTTGATGGGATTATAATGTGGCCACTTTCCTTTATTGGCCATTATGAGTCCTCTACAGGACTGGTGAGGTCCTACATAAACAGTGAAGAACCCCCCATGCATGTCCCTGTGTGCGTCCCGATGAGAAGGCCTGGATGGGTTTAACAGGGGTGGCAGCATGCGGGTGGGGCTGTGGGCAGGCATTCGGTATCCAGCACACTTAAGCGGCTTTATGCATGAGCATTCAGATTTGACCGGCCTACACTCTTTTTTATTGTCTGGTTTCCATGCTTCCAGAATTTCTATTTCTCTATTTCTCCTCTAGAAACAACACACGGAGCTTGCTAAGTGCAGACTGCCTAGGTTACTACTCTGTTGCTGTGATCAGACTCCTTACAAAAGGAACCCGGGGAAGTACGAAGCTGCTATCCATCATGGTGGGAGGTCGGCAGCTG
Seq C2 exon
ATTTCAGCAATGTCCCTGACGTCACAACTGGCCTGAAGAGGAGCCATACAGAAGGCACCCTGGATCAGGTGCCCCACAGGGAGAAGATGGAGCAGACATTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016728-'20-18,'20-17,21-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.600 C2=0.857
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(46.4=43.8)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000065386fB15104
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAATGAAATCAGGAGCT
R:
TGCTCCATCTTCTCCCTGTGG
Band lengths:
349-1080
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]