RnoEX0090586 @ rn6
Exon Skipping
Gene
ENSRNOG00000016728 | Tiam2
Description
T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol;Acc:2324148]
Coordinates
chr1:44327042-44328465:+
Coord C1 exon
chr1:44327042-44327142
Coord A exon
chr1:44327839-44327989
Coord C2 exon
chr1:44328350-44328465
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTATTCTTTTATTTATGAGGTG
3' ss Score
-1.7
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGAATGAAGACCAAGGCCTCACTACTCCATGGGCTACAGAGTTCCAGTCCTGCAGGGATCAAAGGATTGTAGACATGGATGGCGACAATAGCCTCCCAACG
Seq A exon
GTGGGAGCTTGCAGGCCATGGTGTGCAGGTAGAGGTCAGTGAACAACTTGTAGGGGTCCGCTCTCTCCATCACATAGCATCCGGGGATTTGTCGCAGGCCATCAAGCACGGCGGCAGGCACCTTTGCTTACCGAGGCACTGACACTGACAG
Seq C2 exon
GGCCACTTCATGGACTTTCCCTGCACACCTACACTTGTTAAATACCTGCTTTGTTCCCAAGACCATGTAAAACCCGCTGAGCATTAACCACCCTCCCAGCGAAAGCCAGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016728-'4-3,'4-2,5-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAAGGCCTCACTACTCC
R:
CTGCAGCCTGGCTTTCGC
Band lengths:
210-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]