RnoEX0092127 @ rn6
Exon Skipping
Gene
ENSRNOG00000026650 | Tmprss4
Description
transmembrane serine protease 4 [Source:RGD Symbol;Acc:1305033]
Coordinates
chr8:49487524-49502647:-
Coord C1 exon
chr8:49502369-49502647
Coord A exon
chr8:49490471-49490582
Coord C2 exon
chr8:49487524-49487557
Length
112 bp
Sequences
Splice sites
3' ss Seq
TATTGTTATCTCCTGACCAGGAG
3' ss Score
6.92
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
CTTCAGTTGAATTATAGGACTTGACCAACCCCATAGTCCTCAAGTCACTCCTAGATAGTGGCAGGTGGTAGCTGGCTTGCGGAAGGAGGAGGAAGAAGAGAATGCTGGAAATCAAGGAGCAAGTCCAGCTTTGCACTTGGGCCCCCTCTGCCCAGTGCTGACCACAGCTTTCTGAGCTGCTTCCTAATGAGGCTCATTTGAGGACCCTCTCCTGCTGTCTTGGGTGACAGATCTAGCTCCAGGCTGTAAGAAAACTAGGAGGATTACCAAAGCAATATG
Seq A exon
GAGTCCACAAGGCCAACTGCTCTGATCTGTTCTCATCCTCATCCTGAAAGTTCTCCCCTCCACCCAGCTTGGCGATGACCAAGAAGAGCATGGGAGTGAGCAGAGCCCAGAG
Seq C2 exon
GAGCCAGACAGTGGCCAACCCCTGAACAACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026650_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000040313fB15388
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGTGGCAGGTGGTAGCTGG
R:
ATGGTTGTTCAGGGGTTGGC
Band lengths:
258-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]