RnoEX0092132 @ rn6
Exon Skipping
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53411316-53420548:+
Coord C1 exon
chr8:53411316-53411388
Coord A exon
chr8:53417275-53417377
Coord C2 exon
chr8:53420413-53420548
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCTAACCCTTATTTCTCCAGAGT
3' ss Score
7.73
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CTGACATGAGGACAGGAGCCACACCCTGCCCAGCAGACCTTACTGCCTTACATCAGTGCAACTGACTCACCTG
Seq A exon
AGTTCAACATTGGATGACCAATGCCCAATGGAGATCCGGTGCACAGAAGAGGGTCCTGGGCCTGGGATCTTCAGAGCAGAGTTGGGAGACCAGCAGCAACCCA
Seq C2 exon
TATCTTTCAGAATAAATGGTGAGGATCTTCTGCTTGAAGTGCAAGTAAGGGCTCGGCCAGACTGGCTCCTGGTCTGCCATGAGGGCTGGAACCCTGCCCTGGGGATGCACATCTGCCAGAGTCTTGGATATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.179 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF154941=SRCR_2=PU(39.8=84.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACATGAGGACAGGAGCCA
R:
ATCCAAGACTCTGGCAGATGTG
Band lengths:
202-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]