RnoEX0092842 @ rn6
Exon Skipping
Gene
ENSRNOG00000022514 | Tor2a
Description
torsin family 2, member A [Source:RGD Symbol;Acc:1359111]
Coordinates
chr3:11797686-11798723:+
Coord C1 exon
chr3:11797686-11797861
Coord A exon
chr3:11798075-11798199
Coord C2 exon
chr3:11798596-11798723
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTCTGGGCTCTGACTTCTAGATC
3' ss Score
7.74
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AATGAGCTCAAGAGCTGGGTCCAGGGGAACCTCACTGCCTGTGGCCGGTCTCTTTTCCTCTTCGATGAGATGGACAAGCTGCCCCCTGGCCTGATGGAAGTCCTGAAGCCCTTCCTGGGCCCTTCTTGGGTTGTGTATGGGACCAACTATCGCAAAGCCATTTTCATCTTTATCAG
Seq A exon
ATCCTTGCTGCTGTGTGAATCCCAGCCTGGTCAACAGTCATCCCTCCTTGGTAGTTGAGAGGACACAAGCATGGGAGAAGGGGACCAGTATCCCTACTCTCCAGCCTCAGCCATGTTTCCAAGCT
Seq C2 exon
CAATACTGGAGGTGAGCAGATCAACCAGGTGGCCCTGGAGGCATGGCGCAGCCGTAGGGACAGGGAAGAAATCAGCCTACAGGAGGTGGAGCCAGCAGTGTCCCAAGCTGTGTTGGACAACCCTCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022514-'8-5,'8-4,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PD(15.9=33.9)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000030694fB15486
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGTCTCTTTTCCTCTTCG
R:
TTGTCCAACACAGCTTGGGAC
Band lengths:
253-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]