RnoEX0092997 @ rn6
Exon Skipping
Gene
ENSRNOG00000054118 | Tpgs2
Description
tubulin polyglutamylase complex subunit 2 [Source:RGD Symbol;Acc:1310571]
Coordinates
chr18:17350156-17352083:-
Coord C1 exon
chr18:17351996-17352083
Coord A exon
chr18:17350844-17350937
Coord C2 exon
chr18:17350156-17350242
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTCTAAATGGCCTAATGCAGTGA
3' ss Score
1.63
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
AAAAACAATTGTGTGATGCCTGAGGATGTGAGAAACTTCTACTTGATGACCAATGGTTTTCACATGACCTGGAGTGTGAAGCTAGATG
Seq A exon
TGACAGAAGGGGAATGGGATTAAAGAGATGGCTGCATGGTTAGCAGCATTTCTGCTCTTCCAGAGGACCCGAGTTTGGTTCCCCCAGCACGCAG
Seq C2 exon
TCTCTTCTTCAACAACACCGTAATAACCATGGCTGGAACTGTCCCATCACCTTTGGCGCCCAGTTCCTCTGTTTGTTTACATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054118-'6-13,'6-12,7-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF093465=SMI1_KNR4=FE(19.2=100)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000082963fB15515
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGTGATGCCTGAGGATGTG
R:
CTGTCATGTAAACAAACAGAGGAAC
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]