RnoEX0093133 @ rn6
Exon Skipping
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74645135-74648045:-
Coord C1 exon
chr16:74647989-74648045
Coord A exon
chr16:74646825-74646878
Coord C2 exon
chr16:74645135-74645191
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTACAATTTTAATTCTCTAGCTA
3' ss Score
4.93
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AAACAAAAAGGTGTTATCGAGCACGTCGAAGTCCACTAAACTAAACGGCAGCATTGG
Seq A exon
CTATGACGGAAATGAAGAGACAACCACGTTCACTAACGGAAGTAGCATTGACAG
Seq C2 exon
TATGTCGTATCAAGATGACATGAAATCGTCAAATTGCATGGACCCCACCAGTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837-'7-5,'7-4,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.895 C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGTGTTATCGAGCACGTC
R:
TTTTCACTGGTGGGGTCCATG
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]