RnoEX0093185 @ rn6
Exon Skipping
Gene
ENSRNOG00000008145 | Traf3
Description
Tnf receptor-associated factor 3 [Source:RGD Symbol;Acc:1304633]
Coordinates
chr6:135610743-135690709:+
Coord C1 exon
chr6:135610743-135610852
Coord A exon
chr6:135672583-135672693
Coord C2 exon
chr6:135690451-135690709
Length
111 bp
Sequences
Splice sites
3' ss Seq
GCATTCCTCTTGGTTCCCAGGTC
3' ss Score
8.95
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GATGAATGACTGATTCATAGTCGGAGAGCTGCAGAGAGGCTGGAAGGCAGGCGGTTCTGGGATCCAGCTGGGGCCGAATGCACACCTTCCACCTTCGATTAACACCAAAG
Seq A exon
GTCCAGGGTCCCCGTTACTTGAAGGATAAGGCTGGCACTGCTCCGACATCTTTGTGGAAGCTTCTCCCTCACTTCTGAGCTTCCCTGGACTCCTTACAGCGTATGACACAG
Seq C2 exon
AATTTCTCCTCCCTAAGATGGAGCCAAGCAAGAAGATGGGTGCTGCTGGCGCAGCGCAGCCCAACCCACCCCTCAAGCTGCAGCCCGATCGCGGCGCAGCGTCAGTGCTCGTGCCGGAGCAAGGAGGCTACAAGGAGAAGTTCGCGAAGACAGTGGAGGACAAGTACAAGTGCGAGAAGTGCCGCCTGGTGCTGTGCAACCCGAAGCAGACGGAGTGTGGGCACCGCTTCTGTGAGAGCTGCATGGCCGCCCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008145-'5-8,'5-3,16-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.292
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009720=zf-C3HC4=PU(74.4=35.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTCGGAGAGCTGCAGAGAG
R:
CTTGTCCTCCACTGTCTTCGC
Band lengths:
257-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]