RnoEX0093548 @ rn6
Exon Skipping
Gene
ENSRNOG00000003219 | Trim16
Description
tripartite motif-containing 16 [Source:RGD Symbol;Acc:1309749]
Coordinates
chr10:49240930-49245822:+
Coord C1 exon
chr10:49240930-49241025
Coord A exon
chr10:49244167-49244267
Coord C2 exon
chr10:49245589-49245822
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTCAGTGTGTTTGCTTCTAGCTC
3' ss Score
7.11
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
Exon sequences
Seq C1 exon
GCTGACCTTCGGTGCATGCAGCTGGACCTGGAGCAGAAGCTCAAGTTGAACGAAAATGCCATTGCCCGGCTCCAAGCCAACCACAAGTCTGTTTTG
Seq A exon
CTCTGTCCGGCTGCTTCAACATAAGGAAACCAACAGATAACGGAAAAACTGACATGCAGGGAGCATGTGGACATCCCATGCACTCTCCAGGACCCTTTCTG
Seq C2 exon
GTGTCCGTGTCAGAGGTGAAGGTGGTGGCTGAAGAGAAGTTTGGGGAACTCCTCGCAGCCGTGAGGAAGGCCCAGACTGATGTGATGCTCTTCTTAGAGGAGAAAGAACAGGCTGCACTGAATCAGGTCAACGGCATCAAGACCCACCTGGAGCACAGGAGCATCGAGATGGAGAAAAACAAGCAGGAGCTGGAGAAGTTGGCCTCCATCAGCAACACTGTGCTCTTCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003219_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000065335fB15599
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCCAACCACAAGTCTGT
R:
CAGGAAGAGCACAGTGTTGCT
Band lengths:
256-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]