RnoEX0093822 @ rn6
Exon Skipping
Gene
ENSRNOG00000055524 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:RGD Symbol;Acc:621145]
Coordinates
chr9:9701016-9702306:-
Coord C1 exon
chr9:9702283-9702306
Coord A exon
chr9:9701658-9701740
Coord C2 exon
chr9:9701016-9701131
Length
83 bp
Sequences
Splice sites
3' ss Seq
CGCCTCTTAACCTCACCCAGGAA
3' ss Score
5.53
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
ATGGATTGGGGTACCGAGTTGTGG
Seq A exon
GAAGCCCTAGAAGTTTCCCTGAATCCTTGTCGGACTATTGACCCCTCCTCTTTCTGGAGGCGGAATCTTCGGATGTTGTAGGG
Seq C2 exon
GATCAGTTTGAGGTGCTGGAACGCCACACACAGTGGGGGCTGGATCTGTTGGACAAATACGTGAAGTTCGTGAAAGAACGCGTCGAGGTGGAGCAGTCTTATGCGAAGCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055524_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061118=FCH=PU(7.4=87.5)
A:
NO
C2:
PF0061118=FCH=FE(40.4=100)
Main Inclusion Isoform:
ENSRNOT00000082341fB15650
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]