RnoEX0094259 @ rn6
Exon Skipping
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7240751-7242278:+
Coord C1 exon
chr3:7240751-7240895
Coord A exon
chr3:7241934-7242038
Coord C2 exon
chr3:7242124-7242278
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATGAGTAAATGTCCTTTTAGGTC
3' ss Score
7.13
5' ss Seq
CCGGTAGGA
5' ss Score
8.18
Exon sequences
Seq C1 exon
ATGGACACTGATGTTGTGGTTCTCACAACTGGTGTCTTGGTGTTGATCACCATGCTACCGATGATCCCGCAGTCAGGGAAGCAGCACCTTCTCGACTTCTTTGACATCTTTGGCCGTCTTTCATCATGGTGCCTGAAGAAACCAG
Seq A exon
GTCGTGTGAAGCAGAGTGGAGTTTGCCCGAGGATCCCCTGGTGTGTTTTGAACAGGGGCATGTGGTGTATCCAAATGTACATCTGTCTTACCTTTCTGGAACCCG
Seq C2 exon
GCCATGTGACAGAAGTCTACCTGGTCCACCTCCATGCCAGTGTTTATGCCCTCTTCCATCGCCTTTATGGAATGTACCCTTGTAACTTCGTCTCCTTCCTGCGCTCTCACTACAGCATGAAGGAAAACGTGGAGACTTTTGAAGAAGTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(6.7=100)
A:
PF043887=Hamartin=FE(4.6=100)
C2:
PF043887=Hamartin=FE(7.1=100)
Main Inclusion Isoform:
ENSRNOT00000016904fB15723
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTGGTGTCTTGGTGTTGA
R:
TTCATGCTGTAGTGAGAGCGC
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]