RnoEX0094606 @ rn6
Exon Skipping
Gene
ENSRNOG00000050650 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:RGD Symbol;Acc:2318922]
Coordinates
chr3:11810714-11811608:-
Coord C1 exon
chr3:11811508-11811608
Coord A exon
chr3:11811214-11811261
Coord C2 exon
chr3:11810714-11810814
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGCTTGTTTTATAGGAT
3' ss Score
10.04
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATCCTGGAGCTGGTGCCTAGCAACAATGGAGGCAGGGAACCAGAGAGTTTGCTCGGCCCAAAAATCAGCATAGAAACCTGGCCATGACAGACAAAAGCAAG
Seq A exon
GATCAGAGAAATTCATCTGCCTCTTCCTCTAAAATGGGGATATTAAAG
Seq C2 exon
GAGCTTGGCGATGCCTGTTCCCAGAAAGCTCCAAAACTCAAGGTTCCTAAGAGTCCAGAGAAGATCCTGCGACGCATCTTTGGGACCAGCCATGTGTTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050650-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTTTGCTCGGCCCAAAAA
R:
GATGCGTCGCAGGATCTTCTC
Band lengths:
136-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]