RnoEX0094611 @ rn6
Exon Skipping
Gene
ENSRNOG00000050650 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:RGD Symbol;Acc:2318922]
Coordinates
chr3:11808449-11810095:-
Coord C1 exon
chr3:11809952-11810095
Coord A exon
chr3:11809216-11809357
Coord C2 exon
chr3:11808449-11808549
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACCATCGATGTCTTTTGAAGGTC
3' ss Score
8.23
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATAGACTTCTACGTATATCGTGCTGAGGCCTTCATCCAGCTCTGCGACTTCTCCTCTGCCCTCCAGAACCTCCGCAGGGCCTACTTCTATGAGCCAGAAAATGACAAATACGTGGATCGGCTGGCCTTCGTGCTCTACCTACAG
Seq A exon
GTCAAATATGGGATAGAGGCTGAGTTGGGTGAACATAGACCTGGTATGGCAGGGGTCTGAGTCGAAGCACCAATGCCACAAAACACCAGATCACTCAGTTCTTACAAAGAAACGTTGGTAGCCCAGTGACGTGGCTGAGCAG
Seq C2 exon
GGCCAGTGCCTCTATGAGCTGTGTGACTACCAGGAAGCCCTCTATGTCTTCCTGCAAGCCTCCGACCTCCAGCCCCAAAACCCTTCCTTCAGTTACCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050650-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(45.6=64.6),PF134141=TPR_11=PU(12.5=16.7)
A:
NO
C2:
PF134141=TPR_11=FE(51.6=100)
Main Inclusion Isoform:
ENSRNOT00000071233fB15778
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATATCGTGCTGAGGCCTT
R:
CATCGGTAACTGAAGGAAGGGT
Band lengths:
234-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]