RnoEX0094703 @ rn6
Exon Skipping
Gene
ENSRNOG00000042932 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:RGD Symbol;Acc:1305264]
Coordinates
chr6:21796913-21815507:-
Coord C1 exon
chr6:21815385-21815507
Coord A exon
chr6:21814510-21814706
Coord C2 exon
chr6:21796913-21797140
Length
197 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCTTCATGCCCGCAGAGG
3' ss Score
9.98
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CGCCAGCTCGCAGGTTTGCTGTTTGAGTTGGGATGCACCAGCTCAGCCCTGCAGATATTTGAGAAGCTGGAGATGTGGGAGGACGTAGTCATCTGCCATGAAAGGGCTGGGCAGCACGGGAAG
Seq A exon
AGGCCAGAGCGGGTGTCAGGTGGTCTGGAACTGGAGTTCCGAATGGCTGGGTCACTTGGTGGTGCTGGGAACTGAACTGCGGCTCCCTGCACCAGCGCTTTCAACTGCTGAGTGAGTGCTGCAGCCCCAGCCTGGGGGTTCTCACCGTGACGAGATGATATGTGACGAGAGAGCGTGCGGCACAGTAAAACCCTCAG
Seq C2 exon
GCAGAAGAAATTCTTAGGCAAGAACTGGAGAAGAAGGAAACACCAAGTTTATATTGCTTGCTTGGAGATGTCCTGCAAGATCACTCCTGCTATGACAAGGCCTGGGAGCTGTCCCGACACCGCAGTGCCCGTGCCCAGCGGTCCAAAGCTCTCCTCCATCTTCGGAACAAGGAGTTTCGGGAGTGTGTGGAGTGCTTTGAACGCTCAGTGAAGATTAATCCCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042932_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0051523=TPR_1=WD(100=44.7),PF134141=TPR_11=PU(0.1=0.0)
Main Inclusion Isoform:
ENSRNOT00000006505fB15794
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGGAGATGTGGGAGGA
R:
CTCCCGAAACTCCTTGTTCCG
Band lengths:
244-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]