RnoEX0095618 @ rn6
Exon Skipping
Gene
ENSRNOG00000021931 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:RGD Symbol;Acc:1308324]
Coordinates
chr14:23513724-23517222:+
Coord C1 exon
chr14:23513724-23513752
Coord A exon
chr14:23514444-23514550
Coord C2 exon
chr14:23517128-23517222
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTGTATGCCTGTCTCCATAGAAC
3' ss Score
9.81
5' ss Seq
GAAGTATGG
5' ss Score
3.5
Exon sequences
Seq C1 exon
CAAAGAATCTTGTACTTGCAGGGATTAAG
Seq A exon
AACTGCTGACAGTTTGACAGCTGGCTTCATCAAGCACTGAACAAGAGAAAGACGATACTAACCCATAATCAAGAGGAGGGGTTACCCAGAAGCCTAACTATCAAGAA
Seq C2 exon
GCACTGACAATTCATGATACAAAAAAATGCCAAGCCTGGGATCTAGGGACCAATTTCTTCTTGTGTGAAGATGATGTTGTTAATGAGAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021931-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(31.0=100)
A:
PF0089916=ThiF=PD(3.4=33.3)
C2:
PF0089916=ThiF=FE(22.5=100)
Main Inclusion Isoform:
ENSRNOT00000037509fB15951
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGAATCTTGTACTTGCAGGGA
R:
TGTTTCTCTCATTAACAACATCATCT
Band lengths:
123-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]