RnoEX0096631 @ rn6
Exon Skipping
Gene
ENSRNOG00000029071 | Unc5c
Description
unc-5 netrin receptor C [Source:RGD Symbol;Acc:735109]
Coordinates
chr2:247363842-247366448:+
Coord C1 exon
chr2:247363842-247364010
Coord A exon
chr2:247366009-247366087
Coord C2 exon
chr2:247366215-247366448
Length
79 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGGCTTTTCATGTAGATC
3' ss Score
8.1
5' ss Seq
TAGGTACCA
5' ss Score
3.96
Exon sequences
Seq C1 exon
GCCCCCCATGGAAGACTCTCAGACCCTGCTGACCCCTGTGGTGAGCTGTGGGCCTCCTGGAGCTCTGTTGACCCGTCCTGTCATCCTCACTCTGCATCACTGTGCAGACCCTAACACCGAGGACTGGAAGATCCAGCTCAAAAACCAGGCAGTGCAGGGACAGTGGGAG
Seq A exon
ATCCCAGGATACTTATGTCAAGCGTTACATCCGTGTATAGACAGTGATGGAAAGAGCTGATGCTGGAGAATGAAAATAG
Seq C2 exon
GATGTTGTGGTTGTTGGAGAGGAAAACTTCACAACCCCCTGTTACATTCAGCTGGATGCAGAGGCTTGCCATATTCTCACGGAGAACCTCAGTACCTATGCCCTGGTTGGGCAGTCCACCACCAAAGCAGCTGCCAAGCGTCTGAAGCTGGCCATCTTTGGGCCCCTCTGCTGCTCTTCCCTGGAGTATAGCATCAGAGTCTACTGCCTGGATGACACACAGGATGCCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029071_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(50.5=91.2)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000050330fB16116
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCTAACACCGAGGACTG
R:
CCAGGGCATAGGTACTGAGGT
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]