RnoEX0097082 @ rn6
Exon Skipping
Gene
ENSRNOG00000007710 | Usp20
Description
ubiquitin specific peptidase 20 [Source:RGD Symbol;Acc:1305621]
Coordinates
chr3:9835562-9836083:+
Coord C1 exon
chr3:9835562-9835624
Coord A exon
chr3:9835698-9835827
Coord C2 exon
chr3:9835952-9836083
Length
130 bp
Sequences
Splice sites
3' ss Seq
GCTCCATCTCCCCACCCTAGGCC
3' ss Score
8.99
5' ss Seq
CTGGTAGAT
5' ss Score
2.85
Exon sequences
Seq C1 exon
GTCACCTGCCCCTATGTTGGCTGTGGAGAGTCTTTTGCTGACCATAGCAGCATTCATGCACAG
Seq A exon
GCCTTGGTGACTGGGTCTAGAAGGAAGAGCGGTCTTAGTCACAGTCCCCCAGCACAGTCACTGCAGAGCCGACAAGAGGAAAGCAGGCACAACCCCCACACTAGCCCTGGCTGTGTGGATGGCCGCCCTG
Seq C2 exon
GTGAAAAGGCACAACCTGACTGTGAACCTGACTACGTTACGGGTGTGGTGCTACGCCTGTGAGCGGGAAGTCTTTCTGGAGCAGCGCCTGGCAGTCCACCTGCCCAGCTCCTCAGCCAGGCTCTCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007710-'12-10,'12-9,13-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.977 C2=0.139
Domain overlap (PFAM):
C1:
PF0214814=zf-UBP=FE(30.3=100)
A:
PF0214814=zf-UBP=PD(38.7=54.5)
C2:
PF0214814=zf-UBP=PD(42.4=63.6)
Main Inclusion Isoform:
ENSRNOT00000010786fB16179
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCCTATGTTGGCTGTG
R:
CTCTGAGAGCCTGGCTGAGG
Band lengths:
187-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]