RnoEX0097887 @ rn6
Exon Skipping
Gene
ENSRNOG00000020485 | Vav3
Description
vav guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:1565941]
Coordinates
chr2:212551992-212558062:+
Coord C1 exon
chr2:212551992-212552026
Coord A exon
chr2:212553834-212553902
Coord C2 exon
chr2:212557946-212558062
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTACTTTGGTCTATTGCCAGTTT
3' ss Score
5.99
5' ss Seq
CCTGTCAGT
5' ss Score
-0.23
Exon sequences
Seq C1 exon
GTACCTAAACCAGTAGATTATTCTTGCCAACCCTG
Seq A exon
TTTGAAGAAAAGGCCAGGACACTTTCTACTGGATGGAGCTGTCCTCAGACCTCTCGCTGCTTTGCACCT
Seq C2 exon
GTATGCTGGCCCAATGGAAAGATTGCAGGCAGAAACTGAACTTATTAACAGGGTGAATAGCACTTACCTTGTAAGGCTCAGGACCAAAGAGTCTGGAGAATATGCAATTAGCATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020485-'37-32,'37-31,38-32
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0063014=Filamin=FE(4.5=100),PF0001719=SH2=PU(0.1=0.0)
A:
PF0063014=Filamin=FE(8.5=100),PF0001719=SH2=PU(0.1=0.0)
C2:
PF0063014=Filamin=FE(16.0=100),PF0001719=SH2=PU(52.0=97.5)
Main Inclusion Isoform:
ENSRNOT00000077883fB16301
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAAACCAGTAGATTATTCTTGCCA
R:
GCTAATTGCATATTCTCCAGACTCT
Band lengths:
144-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]