RnoEX0097888 @ rn6
Exon Skipping
Gene
ENSRNOG00000020485 | Vav3
Description
vav guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:1565941]
Coordinates
chr2:212558612-212564749:+
Coord C1 exon
chr2:212558612-212558699
Coord A exon
chr2:212564277-212564466
Coord C2 exon
chr2:212564620-212564749
Length
190 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTTTTTCTTCAGAGA
3' ss Score
10.63
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GTACAATAATGAAGCAAAACACATCAAGATTTTAACAAGAGATGGCTTTTTTCACATTGCAGAAAATAGAAAATTTAAAAGCTTAATG
Seq A exon
AGAGACACGTTTCTCACTAATAACAACAATAATTACTACTCTGAGATCGAAGTTTAGCATGGCTTCTTTTCAGCACGGCATCTGACTGAAGACAAACAGGATGTTCTGCATGCCTGAAGAACAATAGAAAATAACCAACATGAACCAACGAATCCAGTCAATAGGATAGCATCTTGGGGGAAGGGGTCAG
Seq C2 exon
GAACTTGTGGAGTACTACAAGCACCATTCTCTTAAAGAAGGGTTCAGGACCTTAGATACGACGCTACAGTTTCCATACAAGGAGCCTGAACACGCATCTGGACAGAGGGGTAATAGAACAGGCAACAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020485-'40-35,'40-34,41-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.273
Domain overlap (PFAM):
C1:
PF0063014=Filamin=PD(4.1=33.3),PF0001719=SH2=FE(38.7=100)
A:
PF0001719=SH2=PD(0.1=0.0)
C2:
PF0001719=SH2=PD(6.7=11.4)
Main Inclusion Isoform:
ENSRNOT00000077883fB16302
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAATAATGAAGCAAAACACATCA
R:
AGCTGTTGCCTGTTCTATTACCC
Band lengths:
218-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]