RnoEX0098336 @ rn6
Exon Skipping
Gene
ENSRNOG00000012001 | Vps37a
Description
VPS37A, ESCRT-I subunit [Source:RGD Symbol;Acc:1560016]
Coordinates
chr16:54860868-54862604:-
Coord C1 exon
chr16:54862524-54862604
Coord A exon
chr16:54861432-54861663
Coord C2 exon
chr16:54860868-54861145
Length
232 bp
Sequences
Splice sites
3' ss Seq
AGTCTGATTTTTGTTTGTAGTGT
3' ss Score
5.6
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
ATTTGCCACTGTAGAAGAGCTAAAGAAGAGAAGCTTCACCAGGTGATAGCCATGCACAGCCAGTTCCATGCTCCTCTCTAG
Seq A exon
TGTTGGGATCAGACCCATTGCTTTCCATGTGTTCAACAAGCACTCTAAAACCGACCTACATCACCAGCCCTTTCCTTAGTCACCCATCAGCCACAGCAGCGGGCATGTACTGAGAGTCTTGAGTTGAAGTACAGATCCCTACCCTAGGAGAGATGGATGAATCACCCGCCTGCAGCCGTCCCGGCTGAAGGAGTACACTTCAAGGATGAGCATGGGGGTTCTTTTGAAAAGG
Seq C2 exon
ATTTTCCTGAAAACATGAACTATCAAGAAAGAAATGTGACACAAACCTAAGCACATTATTTTCTATTTATGACTTAGGAATTGGCCTTTCATGACCATGGCTGACATCCAGATGCCTATAGAGTATATATGCACCTGAGACTGATTTTGTATAGATTAGAATGATTGCTATATTTGTTTTGAGAAAAGTTTCTGCACTATTTGCACTAAAGATGTTTATTGTTGACAAATCCTGTATTTAAGTTCCTCTGCTATTCCTGATTAAACATATATGCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012001_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PD(7.3=40.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCCATGCACAGCCAGTTC
R:
AATCAGGAATAGCAGAGGAACTT
Band lengths:
298-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]