RnoEX0098341 @ rn6
Exon Skipping
Gene
ENSRNOG00000046439 | Vps37c
Description
VPS37C, ESCRT-I subunit [Source:RGD Symbol;Acc:11384366]
Coordinates
chr1:226742343-226760323:+
Coord C1 exon
chr1:226742343-226742523
Coord A exon
chr1:226759766-226759843
Coord C2 exon
chr1:226760225-226760323
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTCTGTTCCAGTGA
3' ss Score
11.46
5' ss Seq
GAGGTCACT
5' ss Score
2.1
Exon sequences
Seq C1 exon
CGCGTATGAGTGCCGGTATCGTGGCCATCCCGAGGCCCACAAAGCAGGACGCCGGGAGCGCGGCGGAGGGGCACTGCGGCTCGCTCCCGGCTGGACGCGGGAGGAAGTCACATCCGGTAGGGGCGGGCTCGTGGATTCCGGAAGTGCAGGCAGCGGCTGATTGCCCGTGGCGGCGGCTCCG
Seq A exon
TGAGGGCACAGATGTGACAGTTTCCTTCTGTGACATGTGGAGAGGACTGCAGTCGCAGAATACTGAGGGAGACCTGAG
Seq C2 exon
GAGAAGATGGAGGGGCTGAAAGACAAGACCCTGCAGGAGCTGGAGGAAATGCAGAATGACCCAGAAGCCATTGCCCGGCTGGCCTTGGAATCGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046439_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.774
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF072008=Mod_r=PU(18.0=87.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCCACAAAGCAGGAC
R:
TCTTGTCTTTCAGCCCCTCCA
Band lengths:
178-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]