RnoEX0098719 @ rn6
Exon Skipping
Gene
ENSRNOG00000060269 | Vwce
Description
von Willebrand factor C and EGF domains [Source:RGD Symbol;Acc:1309910]
Coordinates
chr1:226687258-226706930:+
Coord C1 exon
chr1:226687258-226687367
Coord A exon
chr1:226690015-226690104
Coord C2 exon
chr1:226706813-226706930
Length
90 bp
Sequences
Splice sites
3' ss Seq
ACCTACCTCTTTCCTTTTAGCCC
3' ss Score
9.81
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
ATGTGGGCTAGACTGTTGCTCCACATTGCCTACATCTTGATTCCGTTGCTGGGGTCTTCGGCCCGAGGCCACACCGGGAGGAAGGCGTCAGGGCACTACTCTGCGGAGAG
Seq A exon
CCCTCTGCTCCTTTGGCTGTGGGAGGGGCATCTGCATCGCCCCCAATGTCTGCTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG
Seq C2 exon
AATGGGGAGGTAGAGTGTTCCTTCACACCATGTCCAGAACTGGAGTGCCCTCGAGAGGAGTGGTTGCTGGGCCCAGGACAATGCTGTTTTACCTGTCGGGAACCCACACCCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060269_MULTIEX1-2/11=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009313=VWC=PD(52.5=77.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCGTTGCTGGGGTCTTC
R:
TGTGGGTTCCCGACAGGTAAA
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]