RnoEX0099528 @ rn6
Exon Skipping
Gene
ENSRNOG00000005990 | Wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:RGD Symbol;Acc:1359296]
Coordinates
chr3:45948177-45951360:-
Coord C1 exon
chr3:45951176-45951360
Coord A exon
chr3:45950949-45951034
Coord C2 exon
chr3:45948177-45948269
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTCTTATCCTTTCAGATC
3' ss Score
12.73
5' ss Seq
TAGGTTTGG
5' ss Score
1.68
Exon sequences
Seq C1 exon
GTGTGGTAGTGTCAAGGACAGCTCATTGGTGGCCTGTGCGTTTTCTCCTGACGGAGGCCTCCTTGTCACTGGCTCCTCGGGAGGGGACTTGACAGTGTGGGATGACAGAATGAGGTGTCTGCACAGCGAGAAGGCACACGACCTCGGGATCACCTGCTGCAGCTTTTCCTCACAGCCTCTCTCTG
Seq A exon
ATCAAAATGAACGGTGAAGAACTCTTACATGAAAAAAATGTACCTTTTAAAAAGTCCGTACGGGATGGTTCAGCTCCTCACAATAG
Seq C2 exon
GCGGAGAGCACGGCCTTCAGCTTTACCGATTGGCATCGTGTGGTCAAGACTGTGAGATCAAACTCTGGGTTGTTTCTTTTACCCGTGTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005990-'9-6,'9-5,10-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.600 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=WD(100=46.0),PF0040027=WD40=PU(52.1=39.7)
A:
NO
C2:
PF0040027=WD40=PD(45.8=68.8)
Main Inclusion Isoform:
ENSRNOT00000008168fB16571
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCGTTTTCTCCTGACGG
R:
AATCGGTAAAGCTGAAGGCCG
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]